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Resource ValueSet/FHIR Server from package us.nlm.vsac#0.21.0 (109 ms)

Package us.nlm.vsac
Type ValueSet
Id Id
FHIR Version R4
Source http://fhir.org/packages/us.nlm.vsac/https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1146.1142/expansion
Url http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.1142
Version 20240123
Status active
Date 2024-01-23T01:10:32-05:00
Name COVID_19TestsForSARS_CoV_2NucleicAcid
Title COVID_19 (Tests for SARS_CoV_2 Nucleic Acid)
Experimental False
Realm us
Authority hl7
Description This value set contains some provisional codes created for the COVID-19 response. It may be incomplete, as not all provisional COVID-19 codes are available in VSAC at the time of publication. Please contact the CSTE RCKMS Content Team for a complete list of codes to be included in this value set.
Purpose (Clinical Focus: This set of values contains codes for laboratory test names associated with detecting the presence of SARS_CoV_2 Nucleic Acid),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: SARS-like Coronavirus; Coronavirus 2),(Exclusion Criteria: none)

Resources that use this resource

StructureDefinition
http://hl7.org/fhir/us/nhsn-med-admin/StructureDefinition/Observation-lab-sars-cov Observation Laboratory SARS COVID-19

Resources that this resource uses

CodeSystem
http://loinc.org LOINC Code System
http://loinc.org LOINC 2.76
http://loinc.org LOINC codes used in this IG


Source

{
  "resourceType" : "ValueSet",
  "id" : "2.16.840.1.113762.1.4.1146.1142",
  "meta" : {
    "versionId" : "52",
    "lastUpdated" : "2024-09-08T16:33:45.000-04:00",
    "profile" : [
      "http://hl7.org/fhir/StructureDefinition/shareablevalueset",
      "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/computable-valueset-cqfm",
      "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/publishable-valueset-cqfm"
    ]
  },
  "extension" : [
    {
      "url" : "http://hl7.org/fhir/StructureDefinition/valueset-author",
      "valueContactDetail" : {
        "name" : "CSTE Author"
      }
    },
    {
      "url" : "http://hl7.org/fhir/StructureDefinition/valueset-keyWord",
      "valueString" : "2019nCoV,Trigger"
    },
    {
      "url" : "http://hl7.org/fhir/StructureDefinition/resource-lastReviewDate",
      "valueDate" : "2024-01-23"
    },
    {
      "url" : "http://hl7.org/fhir/StructureDefinition/valueset-effectiveDate",
      "valueDate" : "2024-01-23"
    }
  ],
  "url" : "http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.1142",
  "identifier" : [
    {
      "system" : "urn:ietf:rfc:3986",
      "value" : "urn:oid:2.16.840.1.113762.1.4.1146.1142"
    }
  ],
  "version" : "20240123",
  "name" : "COVID_19TestsForSARS_CoV_2NucleicAcid",
  "title" : "COVID_19 (Tests for SARS_CoV_2 Nucleic Acid)",
  "status" : "active",
  "date" : "2024-01-23T01:10:32-05:00",
  "publisher" : "CSTE Steward",
  "description" : "This value set contains some provisional codes created for the COVID-19 response. It may be incomplete, as not all provisional COVID-19 codes are available in VSAC at the time of publication. Please contact the CSTE RCKMS Content Team for a complete list of codes to be included in this value set.",
  "jurisdiction" : [
    {
      "coding" : [
        {
          "system" : "urn:iso:std:iso:3166",
          "code" : "US"
        }
      ]
    }
  ],
  "purpose" : "(Clinical Focus: This set of values contains codes for laboratory test names associated with detecting the presence of SARS_CoV_2 Nucleic Acid),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: SARS-like Coronavirus; Coronavirus 2),(Exclusion Criteria: none)",
  "compose" : {
    "include" : [
      {
        "system" : "http://loinc.org",
        "concept" : [
          {
            "code" : "101289-7",
            "display" : "SARS-CoV-2 (COVID-19) RNA [Presence] in Throat by NAA with non-probe detection"
          },
          {
            "code" : "94307-6",
            "display" : "SARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by Nucleic acid amplification using CDC primer-probe set N1"
          },
          {
            "code" : "94308-4",
            "display" : "SARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by Nucleic acid amplification using CDC primer-probe set N2"
          },
          {
            "code" : "94309-2",
            "display" : "SARS-CoV-2 (COVID-19) RNA [Presence] in Specimen by NAA with probe detection"
          },
          {
            "code" : "94310-0",
            "display" : "SARS-related coronavirus N gene [Presence] in Specimen by Nucleic acid amplification using CDC primer-probe set N3"
          },
          {
            "code" : "94311-8",
            "display" : "SARS-CoV-2 (COVID-19) N gene [Cycle Threshold #] in Specimen by Nucleic acid amplification using CDC primer-probe set N1"
          },
          {
            "code" : "94312-6",
            "display" : "SARS-CoV-2 (COVID-19) N gene [Cycle Threshold #] in Specimen by Nucleic acid amplification using CDC primer-probe set N2"
          },
          {
            "code" : "94313-4",
            "display" : "SARS-related coronavirus N gene [Cycle Threshold #] in Specimen by Nucleic acid amplification using CDC primer-probe set N3"
          },
          {
            "code" : "94314-2",
            "display" : "SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Specimen by NAA with probe detection"
          },
          {
            "code" : "94315-9",
            "display" : "SARS-related coronavirus E gene [Presence] in Specimen by NAA with probe detection"
          },
          {
            "code" : "94316-7",
            "display" : "SARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by NAA with probe detection"
          },
          {
            "code" : "94500-6",
            "display" : "SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection"
          },
          {
            "code" : "94502-2",
            "display" : "SARS-related coronavirus RNA [Presence] in Respiratory system specimen by NAA with probe detection"
          },
          {
            "code" : "94509-7",
            "display" : "SARS-related coronavirus E gene [Cycle Threshold #] in Specimen by NAA with probe detection"
          },
          {
            "code" : "94510-5",
            "display" : "SARS-CoV-2 (COVID-19) N gene [Cycle Threshold #] in Specimen by NAA with probe detection"
          },
          {
            "code" : "94511-3",
            "display" : "SARS-CoV-2 (COVID-19) ORF1ab region [Cycle Threshold #] in Specimen by NAA with probe detection"
          },
          {
            "code" : "94532-9",
            "display" : "SARS-related coronavirus+MERS coronavirus RNA [Presence] in Respiratory system specimen by NAA with probe detection"
          },
          {
            "code" : "94533-7",
            "display" : "SARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory system specimen by NAA with probe detection"
          },
          {
            "code" : "94534-5",
            "display" : "SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Respiratory system specimen by NAA with probe detection"
          },
          {
            "code" : "94559-2",
            "display" : "SARS-CoV-2 (COVID-19) ORF1ab region [Presence] in Respiratory system specimen by NAA with probe detection"
          },
          {
            "code" : "94565-9",
            "display" : "SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with non-probe detection"
          },
          {
            "code" : "94639-2",
            "display" : "SARS-CoV-2 (COVID-19) ORF1ab region [Presence] in Specimen by NAA with probe detection"
          },
          {
            "code" : "94640-0",
            "display" : "SARS-CoV-2 (COVID-19) S gene [Presence] in Respiratory system specimen by NAA with probe detection"
          },
          {
            "code" : "94641-8",
            "display" : "SARS-CoV-2 (COVID-19) S gene [Presence] in Specimen by NAA with probe detection"
          },
          {
            "code" : "94642-6",
            "display" : "SARS-CoV-2 (COVID-19) S gene [Cycle Threshold #] in Respiratory system specimen by NAA with probe detection"
          },
          {
            "code" : "94643-4",
            "display" : "SARS-CoV-2 (COVID-19) S gene [Cycle Threshold #] in Specimen by NAA with probe detection"
          },
          {
            "code" : "94644-2",
            "display" : "SARS-CoV-2 (COVID-19) ORF1ab region [Cycle Threshold #] in Respiratory system specimen by NAA with probe detection"
          },
          {
            "code" : "94645-9",
            "display" : "SARS-CoV-2 (COVID-19) RdRp gene [Cycle Threshold #] in Specimen by NAA with probe detection"
          },
          {
            "code" : "94646-7",
            "display" : "SARS-CoV-2 (COVID-19) RdRp gene [Cycle Threshold #] in Respiratory system specimen by NAA with probe detection"
          },
          {
            "code" : "94647-5",
            "display" : "SARS-related coronavirus RNA [Presence] in Specimen by NAA with probe detection"
          },
          {
            "code" : "94660-8",
            "display" : "SARS-CoV-2 (COVID-19) RNA [Presence] in Serum or Plasma by NAA with probe detection"
          },
          {
            "code" : "94745-7",
            "display" : "SARS-CoV-2 (COVID-19) RNA [Cycle Threshold #] in Respiratory system specimen by NAA with probe detection"
          },
          {
            "code" : "94746-5",
            "display" : "SARS-CoV-2 (COVID-19) RNA [Cycle Threshold #] in Specimen by NAA with probe detection"
          },
          {
            "code" : "94756-4",
            "display" : "SARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory system specimen by Nucleic acid amplification using CDC primer-probe set N1"
          },
          {
            "code" : "94757-2",
            "display" : "SARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory system specimen by Nucleic acid amplification using CDC primer-probe set N2"
          },
          {
            "code" : "94758-0",
            "display" : "SARS-related coronavirus E gene [Presence] in Respiratory system specimen by NAA with probe detection"
          },
          {
            "code" : "94759-8",
            "display" : "SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with probe detection"
          },
          {
            "code" : "94760-6",
            "display" : "SARS-CoV-2 (COVID-19) N gene [Presence] in Nasopharynx by NAA with probe detection"
          },
          {
            "code" : "94765-5",
            "display" : "SARS-related coronavirus E gene [Presence] in Serum or Plasma by NAA with probe detection"
          },
          {
            "code" : "94766-3",
            "display" : "SARS-CoV-2 (COVID-19) N gene [Presence] in Serum or Plasma by NAA with probe detection"
          },
          {
            "code" : "94767-1",
            "display" : "SARS-CoV-2 (COVID-19) S gene [Presence] in Serum or Plasma by NAA with probe detection"
          },
          {
            "code" : "94819-0",
            "display" : "SARS-CoV-2 (COVID-19) RNA [Log #/volume] (viral load) in Specimen by NAA with probe detection"
          },
          {
            "code" : "94822-4",
            "display" : "SARS-CoV-2 (COVID-19) RNA [Presence] in Saliva (oral fluid) by Sequencing"
          },
          {
            "code" : "94845-5",
            "display" : "SARS-CoV-2 (COVID-19) RNA [Presence] in Saliva (oral fluid) by NAA with probe detection"
          },
          {
            "code" : "95406-5",
            "display" : "SARS-CoV-2 (COVID-19) RNA [Presence] in Nose by NAA with probe detection"
          },
          {
            "code" : "95409-9",
            "display" : "SARS-CoV-2 (COVID-19) N gene [Presence] in Nose by NAA with probe detection"
          },
          {
            "code" : "95424-8",
            "display" : "SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by Sequencing"
          },
          {
            "code" : "95425-5",
            "display" : "SARS-CoV-2 (COVID-19) N gene [Presence] in Saliva (oral fluid) by NAA with probe detection"
          },
          {
            "code" : "95521-1",
            "display" : "SARS-CoV-2 (COVID-19) N gene [#/volume] (viral load) in Respiratory system specimen by NAA with probe detection"
          },
          {
            "code" : "95522-9",
            "display" : "SARS-CoV-2 (COVID-19) N gene [Log #/volume] (viral load) in Respiratory system specimen by NAA with probe detection"
          },
          {
            "code" : "95608-6",
            "display" : "SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with non-probe detection"
          },
          {
            "code" : "95609-4",
            "display" : "SARS-CoV-2 (COVID-19) S gene [Presence] in Respiratory system specimen by Sequencing"
          },
          {
            "code" : "95823-1",
            "display" : "SARS-related coronavirus E gene [Presence] in Saliva (oral fluid) by NAA with probe detection"
          },
          {
            "code" : "95824-9",
            "display" : "SARS-CoV-2 (COVID-19) ORF1ab region [Presence] in Saliva (oral fluid) by NAA with probe detection"
          },
          {
            "code" : "95970-0",
            "display" : "SARS-CoV-2 (COVID-19) specific TCRB gene rearrangements [Presence] in Blood by Sequencing"
          },
          {
            "code" : "96091-4",
            "display" : "SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Saliva (oral fluid) by NAA with probe detection"
          },
          {
            "code" : "96120-1",
            "display" : "SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Lower respiratory specimen by NAA with probe detection"
          },
          {
            "code" : "96121-9",
            "display" : "SARS-related coronavirus E gene [Presence] in Lower respiratory specimen by NAA with probe detection"
          },
          {
            "code" : "96122-7",
            "display" : "SARS-related coronavirus E gene [Presence] in Upper respiratory specimen by NAA with probe detection"
          },
          {
            "code" : "96123-5",
            "display" : "SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Upper respiratory specimen by NAA with probe detection"
          },
          {
            "code" : "96448-6",
            "display" : "SARS-CoV-2 (COVID-19) N gene [Presence] in Saliva (oral fluid) by Nucleic acid amplification using CDC primer-probe set N1"
          },
          {
            "code" : "96756-2",
            "display" : "SARS-CoV-2 (COVID-19) S gene codon N501= [Presence] in Specimen by Molecular genetics method"
          },
          {
            "code" : "96757-0",
            "display" : "SARS-CoV-2 (COVID-19) S gene codon N501Y [Presence] in Specimen by Molecular genetics method"
          },
          {
            "code" : "96763-8",
            "display" : "SARS-CoV-2 (COVID-19) E gene [Presence] in Respiratory system specimen by NAA with probe detection"
          },
          {
            "code" : "96764-6",
            "display" : "SARS-CoV-2 (COVID-19) E gene [Cycle Threshold #] in Respiratory system specimen by NAA with probe detection"
          },
          {
            "code" : "96765-3",
            "display" : "SARS-CoV-2 (COVID-19) S gene [Presence] in Saliva (oral fluid) by NAA with probe detection"
          },
          {
            "code" : "96797-6",
            "display" : "SARS-CoV-2 (COVID-19) RNA [Presence] in Oropharyngeal wash by NAA with probe detection"
          },
          {
            "code" : "96898-2",
            "display" : "SARS-CoV-2 (COVID-19) N gene [Cycle Threshold #] in Oropharyngeal wash by NAA with probe detection"
          },
          {
            "code" : "96899-0",
            "display" : "SARS-CoV-2 (COVID-19) ORF1ab region [Cycle Threshold #] in Oropharyngeal wash by NAA with probe detection"
          },
          {
            "code" : "96900-6",
            "display" : "SARS-CoV-2 (COVID-19) S gene [Cycle Threshold #] in Oropharyngeal wash by NAA with probe detection"
          },
          {
            "code" : "96957-6",
            "display" : "SARS-CoV-2 (COVID-19) M gene [Presence] in Upper respiratory specimen by NAA with probe detection"
          },
          {
            "code" : "96958-4",
            "display" : "SARS-CoV-2 (COVID-19) N gene [Presence] in Saliva (oral fluid) by Nucleic acid amplification using CDC primer-probe set N2"
          },
          {
            "code" : "96986-5",
            "display" : "SARS-CoV-2 (COVID-19) N gene [Presence] in Nose by NAA with non-probe detection"
          },
          {
            "code" : "97098-8",
            "display" : "SARS-CoV-2 (COVID-19) Nsp2 gene [Presence] in Upper respiratory specimen by NAA with probe detection"
          },
          {
            "code" : "97104-4",
            "display" : "SARS-CoV-2 (COVID-19) ORF1ab region [Units/volume] (viral load) in Upper respiratory specimen by NAA with probe detection"
          },
          {
            "code" : "98131-6",
            "display" : "SARS-CoV-2 (COVID-19) ORF1b region [Presence] in Respiratory system specimen by NAA with probe detection"
          },
          {
            "code" : "98132-4",
            "display" : "SARS-CoV-2 (COVID-19) ORF1a region [Presence] in Respiratory system specimen by NAA with probe detection"
          },
          {
            "code" : "98493-0",
            "display" : "SARS-CoV-2 (COVID-19) ORF1b region [Presence] in Saliva (oral fluid) by NAA with probe detection"
          },
          {
            "code" : "98494-8",
            "display" : "SARS-CoV-2 (COVID-19) ORF1a region [Presence] in Saliva (oral fluid) by NAA with probe detection"
          }
        ]
      }
    ]
  },
  "expansion" : {
    "identifier" : "urn:uuid:a0b1faf4-144a-4fb8-801b-41f0fb17acf7",
    "timestamp" : "2024-12-10T06:28:28-05:00",
    "total" : 79,
    "contains" : [
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "101289-7",
        "display" : "SARS-CoV-2 (COVID-19) RNA [Presence] in Throat by NAA with non-probe detection"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "94307-6",
        "display" : "SARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by Nucleic acid amplification using CDC primer-probe set N1"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "94308-4",
        "display" : "SARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by Nucleic acid amplification using CDC primer-probe set N2"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "94309-2",
        "display" : "SARS-CoV-2 (COVID-19) RNA [Presence] in Specimen by NAA with probe detection"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "94310-0",
        "display" : "SARS-related coronavirus N gene [Presence] in Specimen by Nucleic acid amplification using CDC primer-probe set N3"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "94311-8",
        "display" : "SARS-CoV-2 (COVID-19) N gene [Cycle Threshold #] in Specimen by Nucleic acid amplification using CDC primer-probe set N1"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "94312-6",
        "display" : "SARS-CoV-2 (COVID-19) N gene [Cycle Threshold #] in Specimen by Nucleic acid amplification using CDC primer-probe set N2"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "94313-4",
        "display" : "SARS-related coronavirus N gene [Cycle Threshold #] in Specimen by Nucleic acid amplification using CDC primer-probe set N3"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "94314-2",
        "display" : "SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Specimen by NAA with probe detection"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "94315-9",
        "display" : "SARS-related coronavirus E gene [Presence] in Specimen by NAA with probe detection"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "94316-7",
        "display" : "SARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by NAA with probe detection"
      },
      {
        "system" : "http://loinc.org",
        "version" : "2.78",
        "code" : "94500-6",
        "display" : "SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection"
      },
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  },
  "text" : {
  }
}

XIG built as of ??metadata-date??. Found ??metadata-resources?? resources in ??metadata-packages?? packages.